The Institute of Measurement of the Slovak Academy of Sciences has 5 scientific departments:
- Department of Optoelectronic Measuring Methods
 - Department of Magnetometry
 - Department of Theoretical Methods
 - Department of Imaging Methods
 - Department of Biomeasurements
 
The support and administrative units of the institute consist of:
- Innovation and Instrument Technology Development Unit
 - Economics and Administration Unit
 - Editorial Office of the Measurement Science Review
 - Library
 - Secretariat of the Director
 
