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Home arrow Departments arrow Theoretical Methods arrow Department Projects arrow Advanced classification and prediction methods in biosignal analysis and biologically inspired computer vision
Advanced classification and prediction methods in biosignal analysis and biologically inspired computer vision

Project of the Scientific Grant Agency VEGA 2/0019/10

Duration of the project: 01/2010 - 12/2012

Principal investigator: prof. RNDr. Ing. Ivan Bajla, PhD

Project partners: Faculty of Mathematics, Physics and Informatics of the Comenius University Bratislava (FMFI UK) and Institute of Measurement Science of the Slovak Academy of Sciences (IMS SAS)

Project summary  

The project is oriented towards exploration and applications of novel prediction methods of nonlinear dynamic systems, biologically inspired hierarchical network models (HTM) with inherent temporal component, artificial neuronal networks and advanced mathematical statistics for analysis of time series (mainly biosignals), and object recognition in visual scenes. Its key goals are: to explore dynamics of complex time series from various experimental domains and to propose original prediction algorithms, to explore the methods of computer vision based on the new prediction-memory network model of HTM, to apply the developed algorithms to tasks of object recognition in complex visual scenes comprising moving and occluded objects and to prediction of one- and multi-dimensional biological time series. 

State-of-the-art of the project in January 2012  

A special attention was devoted to problems of predictability of synthesized  and real time series. The nonlinear prediction, based on the reconstruction of dynamical properties of the system being studied, proved to be succesful. An optimum reconstruction requires to determine the smallest space dimension that is sufficient for the construction of an equivalent dynamical model. In this relation we analysed a recently introduced notion of „observability“, and proposed a modified method. This method determines a sufficient dimension of inclusion from the decrease of the number of the so-called false neighbors in the process of reconstruction dimension increase. We tested a number of conventional and advanced measures for the analysis and classification of sleep signals (EEG, EKG, EOG a EMG). The best classification was achieved using a combination of the EEG power in delta, alpha and beta bands. The outstanding classification capability was also manifested by some novel characteristics, like fractal dimension and exponent of power spectrum decrease.

The further exploration of the HTM model applied to the classification problem of geometric objects lead us to the problems of optimal codebook generation and to the development of a more efficient temporal pooler operations. We replaced the initial approach of Numenta, the so-called smooth explorer, by a novel „random walk“ approach that is based on the Metropolis-Hastings algorithm of the generation of a Markov sequence of samples from arbitrary probability distribution. By introducing a suitable likelihood function into this algorithm, we significantly decreased the number of learning steps of the given network. We have also re-formulated the initial algorithm of inference in HTM network defined by Gaussian function. Thereby a reduction of controlling parameters has been reached. The core contribution of this research is represented by the development of a pair-wise explorer (temporal pooler) which yields the temporal groups more efficiently than previously. The computer experiments with one-level HTM network using the modified operations showed that the pair-wise explorer yields faster convergence to theoretical maximum of classification rate on the given set of geometrical objects.

Publications

  1. TEPLAN, M. – KRAKOVSKÁ, A. – ŠTOLC, S.: Direct effects of audio-visual stimulation on EEG. Computer Methods and Programs in Biomedicine, 2011, vol. 102, 1, p. 17-24. ISSN 0169-2607. (1.238-IF2010)
  2. KRAKOVSKÁ, A. MEZEIOVÁ, K.: Automatic sleep scoring: A search for an optimal combination of measures. In Artificial Intelligence in Medicine, 2011, vol. 53, 1, p. 25-33. ISSN 0933-3657. (1.568-IF2010)ARENDACKÁ, B.: Approximate interval for the between-group variance under heteroscedasticity. Journal of Statistical Computation & Simulation, 2011, p. 1-10. DOI:10.1080/00949655.2011.606548. ISSN 0094-9655. (0.469-IF2010)
  3. BAJLA, I. – SOUKUP, D. – ŠTOLC, S.: Object recognition. Chapter 6 (p. 83-106): “Occluded image object recognition using localized nonnegative matrix factorization methods“, Tam Phuong Cao, In: Tech open access publisher, Rijeka, 2011, 350 pp. Monography.
  4. ARENDACKÁ, B.: Bootstrap in common mean estimation - a case study. In: Proc. of the 8th Int.Conference on Measurement. Editori: J. Maňka, V. Witkovský, M. Tyšler, I. Frollo,  Bratislava,  Institute of  Measurement Science SAS, 2011. ISBN 978-80-969-672-4-7, p. 69-72.
  5. BARTOŠOVÁ, K.: The influence of increasing number of breath gas compounds on binary classification of noisy data In: Proc. of the 8th Int.Conference on Measurement. Editori: J. Maňka, V. Witkovský, M. Tyšler, I. Frollo,  Bratislava,  Institute of  Measurement Science SAS, 2011. ISBN 978-80-969-672-4-7, p. 76-79.
  6. HORNIŠOVÁ, K.: Performance of likelihood calibration method by Gruet from the posterior point of view. Simulation study. In: Proc. of the 8th Int.Conference on Measurement. Editori: J. Maňka, V. Witkovský, M. Tyšler, I. Frollo,  Bratislava,  Institute of  Measurement Science SAS, 2011. ISBN 978-80-969-672-4-7, p. 73-75.
  7. CHVOSTEKOVÁ, M.: A comparison of simultaneous tolerance intervals in a simple linear regression model. In: Proc. of the 8th Int.Conference on Measurement. Editori: J. Maňka, V. Witkovský, M. Tyšler, I. Frollo,  Bratislava,  Institute of  Measurement Science SAS, 2011. ISBN 978-80-969-672-4-7, p. 16-19. 
  8. CHVOSTEKOVÁ, M.: Simultaneous two-sided tolerance intervals for a linear regression model. In 17th European Young Statisticians Meeting. Editori P.C. Rodrigues, M. de Carvalho. - Lisbon, Portugal : Faculdade de Ciencias e Tecnologia, Universidade Nova de Lisboa, 2011. ISBN 978-972-8893-27-9, p. 63-67.
  9. KRAKOVSKÁ, A. – MEZEIOVÁ, K.: Choice of measurement for phase-space analysis: Review of the actual findings. In: Proc. of the 8th Int.Conference on Measurement. Editori: J. Maňka, V. Witkovský, M. Tyšler, I. Frollo,  Bratislava,  Institute of  Measurement Science SAS, 2011. ISBN 978-80-969-672-4-7, p. 51-54.
  10. MEZEIOVÁ, K. – KRAKOVSKÁ, A.: Choice of measurement for phase-space analysis: Decision based on false nearest neighbors method. In: Proc. of the 8th Int.Conference on Measurement. Editori: J. Maňka, V. Witkovský, M. Tyšler, I. Frollo,  Bratislava,  Institute of  Measurement Science SAS, 2011.  ISBN 978-80-969-672-4-7, p. 55-58.
  11. ŠTOLC, S. – BAJLA, I. – VALENTÍN, K. – ŠKOVIERA, R.: Temporal pooling method for rapid HTM learning applied to geometric object recognition. In: Proc. of the 8th Int.Conference on Measurement. Editori: J. Maňka, V. Witkovský, M. Tyšler, I. Frollo,  Bratislava,  Institute of  Measurement Science SAS, 2011. ISBN 978-80-969-672-4-7, p. 59-64.
  12. TEPLAN, M. – MOLČAN, L. – ZEMAN, M.: Spectral analysis of cardiovascular parameters of rats under irregular light-dark regime In: Proc. of the 8th Int.Conference on Measurement. Editori: J. Maňka, V. Witkovský, M. Tyšler, I. Frollo,  Bratislava,  Institute of  Measurement Science SAS, 2011.  ISBN 978-80-969-672-4-7, p. 343-346.  
  13. WIMMER, G. – KAROVIČ, K.  WITKOVSKÝ, V. – KÖNING, R.: Confidence interval for the distance of two micro/nano structures and its applications in dimensional metrology. In: Proc. of the 8th Int.Conference on Measurement. Editori: J. Maňka, V. Witkovský, M. Tyšler, I. Frollo,  Bratislava,  Institute of  Measurement Science SAS, 2011. ISBN 978-80-969-672-4-7, p. 80-83.   
  14. WITKOVSKÝ, V.: O niektorých exaktných simultánnych konfidenčných oblastiach založených na funkcii vierohodnosti pre parametre normálneho LRM (On some exact simultaneous likelihood-based confidence regions for the parameters of normal LRM). In: Biometric Methods and Models in Current Science and Research, Proc. of the XIX. Summer School of Biometrics. Editori: D. Hampel, J. Hartmann, J. Michálek, Brno,  Central Institute of Supervising and Testing in Agriculture, 2011. ISBN 978-80-7401-028-6, p. 347-357.
 
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